Oral presentation

6.3 Understanding enzyme-substrate interactions and biological roles in Carbohydrate Esterase Family 15

Scott Mazurkewich

Researcher

Chalmers University

Co-author(s):
Johan Larsbrink, Chalmers University

Glucuronoyl esterases  (GEs) are α/β serine hydrolases from Carbohydrate Esterase family 15 (CE15) which cleave an ester linkage that connects lignin to glucuronyl xylan, an important linkage contributing to biomass recalcitrance. In recent years, we have been exploring the structure-function relationships of several CE15 members, particularly focused on bacterial members and those in species encoding multiple CE15 members [1]. Our research indicates that bacterial enzymes exhibit greater diversity compared to fungal members, often featuring large inserts near the active site, likely affecting substrate interactions and specificities. Crystal structures with ligands, as well as biochemical and computational studies, have further identified key residues and potential rate-limiting steps in the catalytic process [2]. While there is considerable evidence supporting the role of many CE15 enzymes as GEs in degrading lignocellulosic lignin-carbohydrate complexes (LCCs), our published work [3, 4] and further studies have revealed several unusual CE15 members in both fungi and bacteria. These CE15 proteins cannot be confidently identified as GEs due to their unique activity profiles, sequences, 3D structures, and genetic contexts. Presented will be our recent and ongoing work into gaining a better understanding of the family as a whole with particular attention given to possible new biological functions for these unusual CE15 members beyond decoupling lignin-glucuronoyl xylan linkages.

References:[1] J. Arnling Bååth et al., “Biochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion,” Biotechnol Biofuels, vol. 11, pp. 213-226, 2018.[2] Z. Zong et al., “Mechanism and biomass association of glucuronoyl esterase: an α/β hydrolase with potential in biomass conversion,” Nat Commun, vol. 13, no. 1, pp. 1449, 2022.[3] A. Seveso, S. Mazurkewich, S. Banerjee, J. C. N. Poulsen, L. Lo Leggio, and J. Larsbrink, “Polysaccharide utilization loci from Bacteroidota encode CE15 enzymes with possible roles in cleaving pectin-lignin bonds,” Appl Environ Microbiol, pp. e0176823, 2024.[4] S. Mazurkewich et al., “Structural and functional investigation of a fungal member of carbohydrate esterase family 15 with potential specificity for rare xylans,” Acta Crystallogr D Struct Biol, vol. 79, no. Pt 6, pp. 545-555, 2023.

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